PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007908-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 310aa    MW: 35299.7 Da    PI: 6.6262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007908-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.3e-192471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  AHYPO_007908-RA 24 RGPWTVEEDLTLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 71
                     89********************************************97 PP

2Myb_DNA-binding50.64.5e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  AHYPO_007908-RA  77 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6481971IPR017930Myb domain
SuperFamilySSF466893.74E-3121118IPR009057Homeodomain-like
SMARTSM007176.5E-162373IPR001005SANT/Myb domain
PfamPF002495.2E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-232578IPR009057Homeodomain-like
CDDcd001672.08E-122671No hitNo description
PROSITE profilePS5129422.91772126IPR017930Myb domain
SMARTSM007172.9E-1476124IPR001005SANT/Myb domain
PfamPF002497.5E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2279125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTTSNNNNKS SNSQSSEDES DLRRGPWTVE EDLTLINYIA THGEGRWNSL ARCAGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TLEEQLLILE LHSRWGNRWS KIAQYLPGRT DNEIKNYWRT  120
RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL VERIQAANAG HPTATATTSG GSTSTTTTTT  180
TATPGHHAMT YSDNFIHAQV NSNFTPENSA NSSDSFGTQI SDFDYYGIPI NNNQDYIQGD  240
QVYYGGENPL SSPNCGYINN QGMDYQGINT NYNTQEQQQQ QWPFGVGDTN DSLWNIEDIY  300
MLQQQFSNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-262111824120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666321.11e-171PREDICTED: transcription factor MYB108-like
SwissprotQ9LDE11e-89MY108_ARATH; Transcription factor MYB108
TrEMBLA0A0J8B5B61e-171A0A0J8B5B6_BETVU; Uncharacterized protein
STRINGPOPTR_0008s10080.11e-122(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-88myb domain protein 78